API Reference
============

Predictor
---------
.. automodule:: epitopegen.inference
   :members:
   :undoc-members:
   :show-inheritance:

Annotator
---------
.. automodule:: epitopegen.annotate
   :members:
   :undoc-members:
   :show-inheritance:

Analysis Tools
-------------
.. automodule:: epitopegen.analyze_deg
   :members:
   :undoc-members:
   :show-inheritance:

.. automodule:: epitopegen.analyze_pa
   :members:
   :undoc-members:
   :show-inheritance: